Protein Homology Detection Through Alignment Of Markov Random Fields Protein Homology Detection Through Alignment Of Markov Random Fields - pdfbook.review

mrfalign protein homology detection through alignment of - this paper has presented a new method for sequence based protein homology detection that compares two protein sequences or families through alignment of two markov random fields mrfs which model the multiple sequence alignment msa of a protein family using an undirected general graph in a probabilistic way, mrfalign protein homology detection through alignment of - detection method mrfalign consisting of three key components 1 a markov random fields mrf representation of a protein family 2 a scoring function measuring similarity of two mrfs and 3 an efficient admm alternating direction method of multipliers algorithm aligning two mrfs, mrfalign protein homology detection through alignment of - mrfalign protein homology detection through alignment of markov random fields jianzhu ma sheng wang zhiyong wang jinbo xu toyota technological institute at chicago chicago illinois united states of america abstract sequence based protein homology detection has been extensively studied and so far the most sensitive method is based, mrfalign protein homology detection through alignment of - mrfalign protein homology detection through alignment of markov random fields jianwei zhu the partial slides are from jianzhu ma this methods article is associated with recomb 2014 this paper is on plos computational biology, mrfalign protein homology detection through alignment of - abstract sequence based protein homology detection has been extensively studied and so far the most sensitive method is based upon comparison of protein sequence profiles which are derived from multiple sequence alignment msa of sequence homologs in a protein family, mrfalign protein homology detection through alignment of - mrfalign protein homology detection through alignment of markov random fields article pdf available in plos computational biology 10 3 e1003500 march 2014 with 110 reads, protein homology detection through alignment of markov - detection through alignment of markov random fields which won the best paper award at a premier computational biology conference recomb2014 and also appeared at plos computational biology, mrfalign protein homology detection through alignment of - this paper presents a new homology detection method mrfalign consisting of three key components 1 a markov random fields mrf representation of a protein family 2 a scoring function measuring similarity of two mrfs and 3 an efficient admm alternating direction method of multipliers algorithm aligning two mrfs, mrfalign protein homology detection through alignment of - structural contact prediction using sparse inverse covariance estimation on large 45 ma j wang s wang z xu j 2014 mrfalign protein homology detection multiple sequence alignments bioinformatics 28 184 190 through alignment of markov random fields